Publications | ABEL@SYSU

Incomplete lineage sorting and long-branch attraction confound phylogenomic inference of Pancrustacea

Hiu Yan Yu, Ka Hou Chu, Ling Ming Tsang, Ka Yan Ma

Frontiers in Ecology and Evolution · 30 Jan 2024

Transcriptome Analysis of Multiple Tissues in the Shrimp Penaeus vannamei Reveals the Typical Physiological Response to Three Pathogens

Ziwei Wu, Ka Hou Chu, Ka Yan Ma

Journal of Marine Science and Engineering · 09 Feb 2023

Comparative genome anatomy of the male and female silver arowanas provides an improved understanding of sex-determination mechanisms in teleosts

Chao Bian, Yi Liu, Yexin Yang, Ka Yan Ma, Yuanyuan Wang, Chao Liu, Guochang Ouyang, Meng Xu, Jinhui Sun, Shao Changwei, Ruihan Li, Xuejie Wang, Jiehu Chen, Qiong Shi, Xidong Mu

Authorea, Inc. · 12 Jan 2023

Making sense of the taxonomy of the most commercially important shrimps Penaeus Fabricius, 1798 s. l. (Crustacea: Decapoda: Penaeidae), a way forward

Chien-Hui Yang, Ka Yan Ma, Ka Hou Chu, Tin-Yam Chan

Aquaculture · 01 Jan 2023

FishPIE: A universal phylogenetically informative exon markers set for ray-finned fishes

Xidong Mu, Yexin Yang, Jinhui Sun, Yi liu, Meng Xu, Changwei Shao, Ka Hou Chu, Wei Li, Chao Liu, Dangen Gu, Miao Fang, Chi Zhang, Fei Liu, Hongmei Song, Xuejie Wang, Jiehu Chen, Ka Yan Ma

iScience · 01 Sep 2022

Nitrous Oxide Emission from Full-Scale Anammox-Driven Wastewater Treatment Systems

Zhiman Lin, Kayan Ma, Yuchun Yang

Life · 28 Jun 2022

Significant response of microbial community to increased salinity across wetland ecosystems

Huaihai Chen, Kayan Ma, Yu Huang, Qi Fu, Yingbo Qiu, Zhiyuan Yao

Geoderma · 01 Jun 2022

Functional Redundancy in Soil Microbial Community Based on Metagenomics Across the Globe

Huaihai Chen, Kayan Ma, Caiyan Lu, Qi Fu, Yingbo Qiu, Jiayi Zhao, Yu Huang, Yuchun Yang, Christopher W. Schadt, Hao Chen

Frontiers in Microbiology · 02 May 2022

Lower functional redundancy in “narrow” than “broad” functions in global soil metagenomics

Huaihai Chen, Kayan Ma, Yu Huang, Qi Fu, Yingbo Qiu, Jiajiang Lin, Christopher W. Schadt, Hao Chen

SOIL · 08 Apr 2022

Influence of different types of nanomaterials on soil enzyme activity: A global meta-analysis

Jiajiang Lin, Kayan Ma, Huaihai Chen, Zuliang Chen, Baoshan Xing

Nano Today · 01 Feb 2022

Genetic assessment of the rare freshwater shrimp

Lai Him Chow, Ling Ming Tsang, Ka Hou Chu, Ka Yan Ma

Marine and Freshwater Research · 13 Jan 2022

Genetic assessment of the rare freshwater shrimp

Lai Him Chow, Ling Ming Tsang, Ka Hou Chu, Ka Yan Ma

Marine and Freshwater Research · 13 Jan 2022

Morphology and molecular phylogeny of ornamental freshwater prawns of the genus Macrobrachium (Decapoda, Caridea, Palaemonidae) from China with the description of a new species

Qinghua Chen, Wenjian Chen, Yuanwei Hu, Ka Yan Ma, Zhaoliang Guo

Crustaceana · 27 Oct 2021

Topography modulates effects of nitrogen deposition on microbial resource limitation in a nitrogen-saturated subtropical forest

Hao Chen, Junjie Tang, Xibin Sun, Kayan Ma, Huaihai Chen, Dejun Li

Forest Ecosystems · 12 Oct 2021

Stable Soil Microbial Functional Structure Responding to Biodiversity Loss Based on Metagenomic Evidences

Huaihai Chen, Kayan Ma, Yu Huang, Zhiyuan Yao, Chengjin Chu

Frontiers in Microbiology · 07 Oct 2021

Distinct suites of pre‐ and post‐adaptations indicate independent evolutionary pathways of snapping claws in the shrimp family Alpheidae (Decapoda: Caridea)

Lai Him Chow, Sammy De Grave, Arthur Anker, Karina Ka Yan Poon, Ka Yan Ma, Ka Hou Chu, Tin‐Yam Chan, Ling Ming Tsang

Evolution · 28 Sep 2021

Confirming the systematic position of two enigmatic shrimps, Amphionides and Procarididae (Crustacea: Decapoda)

Yaqin Wang, Ka Yan Ma, Ling Ming Tsang, Kaori Wakabayashi, Tin‐Yam Chan, Sammy De Grave, Ka Hou Chu

Zoologica Scripta · 02 Aug 2021

Comparative genomics of the coconut crab and other decapod crustaceans: exploring the molecular basis of terrestrial adaptation

Werner Pieter Veldsman, Ka Yan Ma, Jerome Ho Lam Hui, Ting Fung Chan, J Antonio Baeza, Jing Qin, Ka Hou Chu

BMC genomics · 30 Apr 2021

Comparative genomics of the coconut crab and other decapod crustaceans: exploring the molecular basis of terrestrial adaptation

Werner Pieter Veldsman, Ka Yan Ma, Jerome Ho Lam Hui, Ting Fung Chan, J. Antonio Baeza, Jing Qin, Ka Hou Chu

BMC Genomics · 30 Apr 2021

The Chinese mitten crab genome provides insights into adaptive plasticity and developmental regulation

Zhaoxia Cui, Yuan Liu, Jianbo Yuan, Xiaojun Zhang, Tomer Ventura, Ka Yan Ma, Shuai Sun, Chengwen Song, Dongliang Zhan, Yanan Yang, Hourong Liu, Guangyi Fan, Qingle Cai, Jing Du, Jing Qin, Chengcheng Shi, Shijie Hao, Quinn P. Fitzgibbon, Gregory G. Smith, Jianhai Xiang, Tin-Yam Chan, Min Hui, Chenchang Bao, Fuhua Li, Ka Hou Chu

Nature Communications · 22 Apr 2021

Gut Microbiota in Decapod Shrimps: Evidence of Phylosymbiosis

Yuanyuan Tang, Ka Yan Ma, Man Kit Cheung, Chien-Hui Yang, Yaqin Wang, Xuelei Hu, Hoi Shan Kwan, Ka Hou Chu

Microbial Ecology · 24 Feb 2021

Contrasting population structures of freshwater atyid shrimps in Hong Kong and their conservation implications

Ka Yan Ma, Lai Him Chow, Ling Ming Tsang, Sammy De Grave, Ka Hou Chu

Marine and Freshwater Research · 01 Jan 2021

Multi-omic approach provides insights into osmoregulation and osmoconformation of the crab Scylla paramamosain

Jiaojiao Niu, Xue Lei Hu, Jack C H Ip, Ka Yan Ma, Yuanyuan Tang, Yaqin Wang, Jing Qin, Jian-Wen Qiu, Ting Fung Chan, Ka Hou Chu

Scientific reports · 10 Dec 2020

Multi-omic approach provides insights into osmoregulation and osmoconformation of the crab Scylla paramamosain

Jiaojiao Niu, Xue Lei Hu, Jack C. H. Ip, Ka Yan Ma, Yuanyuan Tang, Yaqin Wang, Jing Qin, Jian-Wen Qiu, Ting Fung Chan, Ka Hou Chu

Scientific Reports · 10 Dec 2020

A crustacean annotated transcriptome (CAT) database

Wenyan Nong, Zacary Y. H. Chai, Xiaosen Jiang, Jing Qin, Ka Yan Ma, King Ming Chan, Ting Fung Chan, Billy K. C. Chow, Hoi Shan Kwan, Chris K. C. Wong, Jian-Wen Qiu, Jerome H. L. Hui, Ka Hou Chu

BMC Genomics · 09 Jan 2020

A crustacean annotated transcriptome (CAT) database

Wenyan Nong, Zacary Y H Chai, Xiaosen Jiang, Jing Qin, Ka Yan Ma, King Ming Chan, Ting Fung Chan, Billy K C Chow, Hoi Shan Kwan, Chris K C Wong, Jian-Wen Qiu, Jerome H L Hui, Ka Hou Chu

BMC genomics · 09 Jan 2020

Population Genetic Structure of A Marine Pelagic Egg Producer and Popular Marine Aquarium Species, the Mandarinfish Synchiropus splendidus

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Zoological Studies · 01 Jan 2020

Conservation of freshwater wildlife in Hong Kong: A genetic perspective

Wai Yee Wong, Lai Him Chow, Tsz Huen Wu, Ka Yan Ma, Ling Ming Tsang, Ka Hou Chu

Aquatic Conservation: Marine and Freshwater Ecosystems · 02 Sep 2019

Insights into cryptic diversity and adaptive evolution of the clam Coelomactra antiquata (Spengler, 1802) from comparative transcriptomics

Lefei Yi, Ka Yan Ma, Jing Qin, Ka Hou Chu, Xin Shen, Xueping Meng

Marine Biodiversity · 20 Jul 2019

Phylogenomic analyses of brachyuran crabs support early divergence of primary freshwater crabs

Ka Yan Ma, Jing Qin, Chia-Wei Lin, Tin-Yam Chan, Peter K.L. Ng, Ka Hou Chu, Ling Ming Tsang

Molecular Phylogenetics and Evolution · 01 Jun 2019

Systematic analysis of the caridean shrimp superfamily Pandaloidea (Crustacea: Decapoda) based on molecular and morphological evidence

Yunshi Liao, Ka Yan Ma, Sammy De Grave, Tomoyuki Komai, Tin-Yam Chan, Ka Hou Chu

Molecular Phylogenetics and Evolution · 01 May 2019

Penaeid shrimp genome provides insights into benthic adaptation and frequent molting

Xiaojun Zhang, Jianbo Yuan, Yamin Sun, Shihao Li, Yi Gao, Yang Yu, Chengzhang Liu, Quanchao Wang, Xinjia Lv, Xiaoxi Zhang, Ka Yan Ma, Xiaobo Wang, Wenchao Lin, Long Wang, Xueli Zhu, Chengsong Zhang, Jiquan Zhang, Songjun Jin, Kuijie Yu, Jie Kong, Peng Xu, Jack Chen, Hongbin Zhang, Patrick Sorgeloos, Amir Sagi, Acacia Alcivar-Warren, Zhanjiang Liu, Lei Wang, Jue Ruan, Ka Hou Chu, Bin Liu, Fuhua Li, Jianhai Xiang

Nature Communications · 21 Jan 2019

Contrasting population genetic structure in three aggregating groupers (Percoidei: Epinephelidae) in the Indo-West Pacific: the importance of reproductive mode

Ka Yan Ma, Lynne van Herwerden, Stephen J Newman, Michael L Berumen, John Howard Choat, Ka Hou Chu, Yvonne Sadovy de Mitcheson

BMC evolutionary biology · 04 Dec 2018

Contrasting population genetic structure in three aggregating groupers (Percoidei: Epinephelidae) in the Indo-West Pacific: the importance of reproductive mode

Ka Yan Ma, Lynne van Herwerden, Stephen J. Newman, Michael L. Berumen, John Howard Choat, Ka Hou Chu, Yvonne Sadovy de Mitcheson

BMC Evolutionary Biology · 01 Dec 2018

Speciation pattern of the horned ghost crabOcypode ceratophthalmus(Pallas, 1772): An evaluation of the drivers of Indo-Pacific marine biodiversity using a widely distributed species

Ka Yan Ma, Lai Him Chow, Kingsley J. H. Wong, Hsi-Nien Chen, Brian H. Y. Ip, Christoph D. Schubart, Ling Ming Tsang, Benny K. K. Chan, Ka Hou Chu

Journal of Biogeography · 29 Oct 2018

An Inconvenient Monophyly: An Update on the Taxonomy of the Groupers (Epinephelidae)

Ka Yan Ma, Matthew T. Craig